Subject Guides
Marine Biology
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Subject Specific Databases
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Aquatic Sciences and Fisheries Abstracts (ASFA) [via CSA Illumina] (http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&cat=asfa&adv=1)
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Includes information on the science, technology and management of marine, freshwater, and brackish water environments and organisms. Database consists of the following subfiles: ASFA 1: Biological Sciences and Living Resources; ASFA 2: Ocean Technology, Policy and Non-Living Resources; ASFA 3: Aquatic Pollution and Environmental Quality; ASFA Aquaculture Abstracts; and ASFA Marine Biotechnology Abstracts.
- Coverage: varies by subfile; 1971-present;earlier for selected core titles
- Access: http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&cat=asfa&adv=1 (http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&cat=asfa&adv=1)
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Fish & Fisheries Worldwide [via EBSCO March 20 2009] (http://search.ebscohost.com/login.aspx?authtype=ip,uid&profile=ehost&defaultdb=ffw)
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NEW EBSCO interface. See MORE INFO below for classes on the new interface. Covers fish, fisheries and aquaculture, including biology, genetics, natural history, behavior, diseases, parasites, limnology and oceanography, habitat management, culture, propagation, fish processing, marketing, and fisheries management
- Coverage: 1971-present
- Access: http://search.ebscohost.com/login.aspx?authtype=ip,uid&profile=ehost&defaultdb=ffw (http://search.ebscohost.com/login.aspx?authtype=ip,uid&profile=ehost&defaultdb=ffw)
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Oceanic Abstracts [via CSA Illumina] (http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&cat=oceanic&adv=1)
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Organizes, summaries, and indexes worldwide technical literature on the marine and brackish water environments. Oceanic Abstracts covers marine biology and biological oceanography, physical and chemical oceanography, meteorology, geology, geophysics, geochemistry, marine pollution, conservation, environmental protection, fisheries, aquaculture, nonliving resources and technology, ships and shipping, navigation and communications
- Coverage: 1981-present
- Access: http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&cat=oceanic&adv=1 (http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&cat=oceanic&adv=1)
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General Databases
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BIOSIS Previews [via ISI] (http://isiknowledge.com/BIOSIS)
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More than 20 million records in all life science areas, including agriculture, biochemistry, biomedicine, biotechnology, botany, ecology, environmental sciences, genetics, microbiology, veterinary medicine & pharmacology. Indexes over 6000 journals, serials, books and book chapters, conference proceedings and patents.
- Coverage: 1926-present
- Access: http://isiknowledge.com/BIOSIS (http://isiknowledge.com/BIOSIS)
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Environmental Sciences & Pollution Management [via CSA Illumina] (http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&db=envclust-set-c&db=eisft-set-c&adv=1)
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Major areas of coverage include aquatic pollution, bacteriology, ecology, energy resources, environmental biotechnology & engineering, environmental impact statements, hazardous waste, industrial hygiene, microbiology, and risk assessment. Separately searchable subfiles include: ASFA 3: Aquatic Pollution and Environmental Quality; Bacteriology Abstracts (Microbiology B); Ecology Abstracts; Environment Abstracts (formerly from LexisNexis); Environmental Engineering Abstracts; Health and Safety Science Abstracts; Industrial and Applied Microbiology Abstracts (Microbiology A); Pollution Abstracts; Risk Abstracts; Sustainability Science Abstracts; Toxicology Abstracts; and Water Resources Abstracts. EIS: Full Text and Digests of Environmental Impact Statements is combined for cross-searching with ESPM.
- Coverage: 1967-present (varies by subfile)
- Access: http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&db=envclust-set-c&db=eisft-set-c&adv=1 (http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&db=envclust-set-c&db=eisft-set-c&adv=1)
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Zoological Record [via CSA Illumina] (http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&db=zoorec-m-set-c&adv=1&db=zoorec-n-set-c&adv=1&db=zooclust-set-c&adv=1)
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WILDLIFE. Comprehensive coverage of zoology; including behavior, conservation and environmental science, ecology, evolution, genetics, habitat, marine and freshwater biology, nutrition, parasitology and disease, reproduction, taxonomy and systematics, veterinary studies, zoogeography and fossil records. Especially strong in new species reports and field studies. Backfile for 1864-1977 added April 2007.
- Coverage: 1864-present [1864-1977 backfile added]
- Access: http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&db=zoorec-m-set-c&adv=1&db=zoorec-n-set-c&adv=1&db=zooclust-set-c&adv=1 (http://www.csa.com/htbin/dbrng.cgi?username=davis&access=davis856&db=zoorec-m-set-c&adv=1&db=zoorec-n-set-c&adv=1&db=zooclust-set-c&adv=1)
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Wildlife & Ecology Studies Worldwide [via EBSCO March 20 2009] (http://search.ebscohost.com/login.aspx?authtype=ip,uid&profile=ehost&defaultdb=fzh)
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WILDLIFE. Indexes literature on wild mammals, birds, reptiles, and amphibians; covering all aspects of wildlife and wildlife management
- Coverage: 1935 (& earlier)-present
- Access: http://search.ebscohost.com/login.aspx?authtype=ip,uid&profile=ehost&defaultdb=fzh (http://search.ebscohost.com/login.aspx?authtype=ip,uid&profile=ehost&defaultdb=fzh)
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PubMed (http://uclibs.org/PID/10354)
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Citations and abstracts for articles published in approximately 8,400 journals in medicine, life sciences, health administration, veterinary medicine, nursing, molecular biology and genetics. PubMed is a service of the U.S. National Library of Medicine.
- Coverage: 1949-present
- Access: http://uclibs.org/PID/10354 (http://uclibs.org/PID/10354)
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Science Citation Index Expanded [via Web of Knowledge] (http://isiknowledge.com/wos)
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Multidisciplinary database, with searchable author abstracts, covering the journal literature of the sciences. It indexes more than 5,700 major journals across 164 scientific disciplines. Search for articles that cite a known author or work. Print SCIENCE CITATION INDEX indexes literature back to 1945 and is located in the Shields Library, Third Floor, in the Biological & Agricultural Sciences Reference Collection, at the call number Z 7401 .S36
- Coverage: 1900-present
- Access: http://isiknowledge.com/wos (http://isiknowledge.com/wos)
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PsycINFO [via CSA Illumina] (http://www.csa2.com/htbin/dbrng.cgi?username=davis&access=davis856&cat=psycinfo&adv=1)
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PsycINFO is a department of the American Psychological Association (APA). It provides citations to articles in professional journals, conference proceedings, books, reports, dissertations and even important internet sites in psychology and related disciplines, most with abstracts and some citations. Extensive animal behavior studies covered including primate behavior. (Psychinfo is the incorrect spelling.)
- Coverage: 1840-present
- Access: http://www.csa2.com/htbin/dbrng.cgi?username=davis&access=davis856&cat=psycinfo&adv=1 (http://www.csa2.com/htbin/dbrng.cgi?username=davis&access=davis856&cat=psycinfo&adv=1)
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Dissertation Abstracts International / Dissertations & Theses [via ProQuest] (http://uclibs.org/PID/11984)
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Online access to citations and abstracts for every title in the UMI Dissertation Abstracts database; since 1997, provides full-text access to dissertations. Access is free to UC Campus dissertations.
- Coverage: 1861-present
- Access: http://uclibs.org/PID/11984 (http://uclibs.org/PID/11984)
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- Current Research @ University of California, Davis (searches all University of California, Davis dissertations published in the Dissertation Abstracts database). http://wwwlib.umi.com/cr/ucdavis/main
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ECOTOX (ECOTOXicology) (http://www.epa.gov/ecotox/)
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Provides single chemical toxicity information for aquatic and terrestrial life which is useful for examining impacts of chemicals on the environment. Peer-reviewed literature is the primary source for the database including information on the species, chemical, test methods, and results. Another source of test results is independently compiled data files (such as the Pesticide Ecotoxicity database) provided by various United States and International government agencies. ECOTOX is a unified interface providing access to three U.S. Environmental Protection Agency (U.S. EPA) ecological effects databases: AQUIRE (all aquatic species including freshwater and marine); TERRETOX (terrestrial animal mainly wildlife); and PHYTOTOX (terrestrial plant). Ecology, Toxicology.
- Coverage: 1972-present
- Access: http://www.epa.gov/ecotox/ (http://www.epa.gov/ecotox/)
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SciFinder Scholar [WEB Version] (https://scifinder.cas.org)
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SciFinder Scholar is the most comprehensive bibliographic database for scholarly research in the field of chemistry. It contains over 29 million citations and indexes over 10,000 journals, covering all aspects of chemistry, including chemical aspects of: biology and life sciences, engineering and materials science, food science, geology, medicine, physics, and polymer science. SciFinder Scholar also allows searching of chemical substances and reactions. It is the online version of Chemical Abstracts.
- Coverage: 1907-present
- Location: SciFinder Scholar can only be used by UC students, faculty and staff. Registration is required to use the web version, a "ucdavis.edu" email account is required to register (see "More Information" below)
- Access: https://scifinder.cas.org (https://scifinder.cas.org)
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SciFinder Scholar [CLIENT Software Version]
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SciFinder Scholar is the most comprehensive bibliographic database for scholarly research in the field of chemistry. It contains over 29 million citations and indexes over 10,000 journals, covering all aspects of chemistry, including chemical aspects of: biology and life sciences, engineering and materials science, food science, geology, medicine, physics, and polymer science. SciFinder Scholar also allows searching of chemical substances and reactions. It is the online version of Chemical Abstracts. SciFinder Scholar can only be used by UC students, faculty and staff.
- Coverage: 1907-present
- Location: Available at: Physical Sciences and Engineering Library, Shields Library (Bio-Ag Reference Area only), or any computer with a UCD IP address by loading SciFinder Scholar's client software, see "More Info" below.
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- Installation instructions, links to SciFinder Scholar’s client software, user guides, and additional information are available at the URL below. Questions should be directed to UCD's campus contact: Cory Craig, cjcraig@ucdavis.edu, 530/752-0347. http://www.lib.ucdavis.edu/dept/pse/resources/guides/scifinder.php
- A web version is also available.
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WorldCat [via FirstSearch/OCLC] (http://firstsearch.oclc.org/fsip?dbname=WorldCat)
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OCLC catalog of millions of records for books, journal titles and materials in other formats from approximately 12,000 libraries worldwide.
- Coverage: 1000 A.D.-present
- Access: http://firstsearch.oclc.org/fsip?dbname=WorldCat (http://firstsearch.oclc.org/fsip?dbname=WorldCat)
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Faculty of 1000 Biology TRIAL (http://www.f1000biology.com/browse/)
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The UC Davis General Library is offering special TRIAL access through December 2009 to Faculty of 1000 Biology.
Faculty of 1000 (F1000) Biology is a literature awareness tool that is updated continuously. F1000 Biology comprehensively and systematically highlights and reviews the most interesting papers published in the biological sciences, based on the recommendations of a faculty of well over 2300 selected leading researchers. Through immediate rating of individual papers by the authors' peers, F1000 Biology highlights papers on the basis of their scientific merit rather than that of the journal in which they appear. Features included are: Current Top 10 list, Hidden Jewels list,and the Most viewed list.
- Access: http://www.f1000biology.com/browse/ (http://www.f1000biology.com/browse/)
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Full-text Resources
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ENVIROnetBASE [via CRC Press] (http://uclibs.org/PID/9548)
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This full-text database from CRC Press covers environmental sciences handbooks and includes indexing of chapters and their figures, charts, tables, illustrations, formulas and rules of thumb. Environmental sciences areas covered include environmental engineering and biotechnology, agricultural and natural resources, ecology, pollution and many other areas. More than 100 books are included with about 4 additional titles added monthly.
- Access: http://uclibs.org/PID/9548 (http://uclibs.org/PID/9548)
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Sea Grant Digital Library [via National Sea Grant Library] (http://nsgl.gso.uri.edu/libraries/)
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Digital repository on coastal and marine topics with electronic versions of Sea Grant Publications under ten categories: coastal hazards; diving safety; education; responsible aquaculture; global warming; HACCP (FDA Hazard Analysis and Critical Control Point programs); harmful algae; marine careers; Sea Grant history; and seafood safety/foodborne illnesses. Additional pre-designed workforms facilitate online searching of the entire Sea Grant database for information on either print or online Sea Grant publications on marinas, aquaculture, habitat restoration or education.
- Access: http://nsgl.gso.uri.edu/libraries/ (http://nsgl.gso.uri.edu/libraries/)
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Current Protocols Series (http://www3.interscience.wiley.com/aboutus/sharedfiles/cp_search_fs.html)
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NEW: Microbiology title added and under review for 2007. Laboratory methods and protocols covering the areas of microbiology, molecular biology, nucleic acid chemistry, cell biology, protein science, immunology, neuroscience, human genetics, pharmacology, toxicology, cytometry and bioinformatics. Includes basic, alternate, and support protocols with literature cited and information on suppliers for standard materials and preparation information for reagents and solutions. IMPORTANT NOTE: UC Davis does not currently license current protocols for "Food Analytical Chemistry" or "Magnetic Resonance Imaging".
- Coverage: Updated quarterly or more frequently
- Access: http://www3.interscience.wiley.com/aboutus/sharedfiles/cp_search_fs.html (http://www3.interscience.wiley.com/aboutus/sharedfiles/cp_search_fs.html)
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Springer Protocols (http://www.springerprotocols.com/)
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Springer Protocols contains more than 18,000 molecular biology and biomedical peer-reviewed protocols, mostly from the classic series Methods in Molecular Biology, formerly published by Humana Press. Other series included are: Methods in Molecular Medicine; Methods in Biotechnology; Methods in Pharmacology and Toxicology; and Neuromethods.
- Access: http://www.springerprotocols.com/ (http://www.springerprotocols.com/)
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Cold Spring Harbor Protocols (http://www.cshprotocols.org/)
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A definitive, interactive source of new and classic research techniques. The database covers specific sections on: Antibodies, Bioinformatics/Genomics, Cell Biology, Chromatography, Computational Biology, DNA Delivery/Gene Transfer, Electrophoresis, Genetics, High-Throughput Analysis, Imaging/Microscopy, Immunology, Laboratory Organisms, Molecular Biology, Neuroscience, Plant Biology,
Polymerase Chain Reaction (PCR), Proteins and Proteomics,
RNA Interference (RNAi)/siRNA, Stem Cells, and Transgenic Technology. Unique to this resource is the ability to submit a protocol. Other unique features include protocol recipes and protocol cautions.
- Coverage: 2006-present
- Access: http://www.cshprotocols.org/ (http://www.cshprotocols.org/)
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Methods in Enzymology (http://uclibs.org/PID/61958)
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Methods in Enzymology is the classic laboratory methods/protocols book series. The complete backfile of the full-text is available back to volume 1 from 1955. Direct article/chapter links are provided from core subject databases such as PubMed and BIOSIS Previews. Contains detailed protocols and descriptions of biochemical and biophysical techniques for research in biological and molecular sciences. More than 300 volumes are browseable by individual volumes online from 1955 to the present or by searching across the collection by title, author, abstract, and keyword. Full-text access to articles is available in HTML and PDF formats.
- Coverage: 1955-
- Access: http://uclibs.org/PID/61958 (http://uclibs.org/PID/61958)
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Journal Citation Reports (JCR) (http://uclibs.org/PID/36787)
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Journal Citation Reports® is an annual publication by Thomson Reuters. Journal Citation Reports can show you the
most frequently cited journals in a field, the highest impact journals in a field, and the largest journals in a field. JCR Science Edition contains data from over 5,900 journals in science and technology. JCR Social Sciences Edition contains data from over 1,700 journals in the social sciences.
[2007]
- Coverage: 2007
- Access: http://uclibs.org/PID/36787 (http://uclibs.org/PID/36787)
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Safari Tech Books Online (http://uclibs.org/PID/33109)
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A collection of computing books that includes the full text of over 300 O'Reilly Press books, dating from 2004 to the present. Safari will grow to include all new O'Reilly titles. The full-text is searchable across titles and searches can be limited to code fragments. Books can also be browsed by topic. Access is limited to 28 simultaneous UC connections.
- Coverage: 2004-present
- Access: http://uclibs.org/PID/33109 (http://uclibs.org/PID/33109)
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Springer eBooks Pilot (http://springerlink.com/books/)
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This UC-wide pilot for Springer eBooks includes more than 20,000 titles in English (and selectively in German) from every scientific discipline and many social sciences. This online interface enables all books to be searchable at the full-text level. Scope (textbook areas are starred) ranges from Architecture and Design, *Behavioral Science, *Biomedical and Life Sciences, *Business and Economics, *Chemistry and Materials Science, *Computer Science, *Earth and Environmental Science, *Engineering, *Humanities & Social Sciences and Law, *Mathematics and Statistics, *Medicine, *Physics and Astronomy, to Professional and Applied Computing. Dates of coverage are 2005 to 2009. NEW books are added monthly.
PLEASE NOTE: This is a pilot project. Currently there is no separation of the search feature between books and any Springer UC licensed journals. Search results are mixed with book and journal retrievals displayed together.
- Coverage: 2005-2009
- Access: http://springerlink.com/books/ (http://springerlink.com/books/)
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American Natural Science in the First Half of the Nineteenth Century (http://www.ansp.org/library/digital_library/grant_imls_listings.php)
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The Academy of Natural Sciences of Philadelphia has digitized the first 8 volumes of its journal (1817-1842)as well as nearly two dozen other key texts of antebellum American natural history. Authors represented here include: John James Audubon, Samuel George Morton, Thomas Nuttall and Titian Ramsay Peale, among others.
- Coverage: 1810-1850
- Access: http://www.ansp.org/library/digital_library/grant_imls_listings.php (http://www.ansp.org/library/digital_library/grant_imls_listings.php)
Guides to Electronic, Print, and Other Resources
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Census of Marine Life Portal (http://www.coml.org/coml.htm)
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The Census of Marine Life (CoML) is a research program that seeks to assess the diversity, distribution and abundance of ocean life and to explain how it changes over time. The portal provides access to a global network of researchers in more than 45 nations engaged in this ten-year marine life initiative. Includes three major projects: Ocean Biogeographic Information System (OBIS), the History of Marine Animal Populations project (HMAP), and the Future of Marine Animal Populations project (FMAP). Seven studies have been initiated to collect data for these projects: Biogeography of Deep-Water Chemosynthetic Ecosystems (ChEss); Census of Diversity of Abyssal Marine Life (CeDAMaR); Gulf of Maine Program (GoM); Mid-Atlantic Ridge Ecosystems Project (MAR-ECO); Natural Geography in Shore Areas (NaGISA); Pacific Ocean Shelf Tracking Program (POST); and Tagging of Pacific Pelagics (TOPP).
- Access: http://www.coml.org/coml.htm (http://www.coml.org/coml.htm)
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oneFish: Fishery Projects Portal (http://www.onefish.org/global/index.jsp)
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oneFish is a fishery projects portal and participatory resource gateway for the fisheries and aquatic research and development sector. Covers aquaculture, freshwater fisheries, and marine and coastal fisheries. Each area includes topics such as utilization, development, resources, technology, management, policies and training and more
[1999+]
- Access: http://www.onefish.org/global/index.jsp (http://www.onefish.org/global/index.jsp)
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Ocean Portal (http://www.iode.org/index.php?option=com_content&task=view&id=24&Itemid=65)
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OceanPortal is a directory of ocean data and information related web sites. Covers topics such as: organizations, projects and programs including data centers; environment and governance; scientists and ships; and commerce and trade. Frequently used resources include photo libraries of the Crustacean Gallery, Globe Project Maps & Graphs, and ASF ERS-1 SAR Image Gallery.
- Access: http://www.iode.org/index.php?option=com_content&task=view&id=24&Itemid=65 (http://www.iode.org/index.php?option=com_content&task=view&id=24&Itemid=65)
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Internet Guide to International Fisheries Law (http://www.intfish.net/igifl/index.htm)
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A comprehensive compilation of databases (e.g. Fisheries Treaty Database, Case Law Compendium) and documents on international fisheries legal information on the internet. Includes more than 8000 pages/documents with regularly updated multilateral and bilateral treaties, international and national case law, documents and other legal materials, international organization and country profiles and covers fisheries, marine mammals and the conservation of other marine biodiversity (sea turtles, sea birds etc.).
- Access: http://www.intfish.net/igifl/index.htm (http://www.intfish.net/igifl/index.htm)
Encyclopedias & Dictionaries
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Grzimek's Animal Life Encyclopedia [Gale Virtual Reference Library] (http://galenet.galegroup.com/servlet/eBooks?ste=22&docNum=CX3406799999&q=ucdavis)
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Extensive, completely revised and updated 17-volume version of the original work published in Germany in 1960. Incorporates recent developments in the animal world as noted by prominent advisors and contributors from the scientific community. Volume 1 covers Lower metazoans and lesser deuterostomes and volume 2 is on Protostomes. Volume 3 is about Insects. Volumes 4-5 are both concerning Fishes. Volume 6 pertains to Amphibians and volume 7 is about Reptiles. Volumes 8-11 are all concerning Birds. Volumes 12-16 are on Mammals and lastly, volume 17 is the cumulative index.
[2003]
- Access: http://galenet.galegroup.com/servlet/eBooks?ste=22&docNum=CX3406799999&q=ucdavis (http://galenet.galegroup.com/servlet/eBooks?ste=22&docNum=CX3406799999&q=ucdavis)
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- Each entry by family includes taxonomic placement and brief details including thumbnail description, size, number of genera/species, habitat, conservation status, and distribution map.
- Detailed sections describe: evolution and systematics; physical characteristics; distribution; habitat; behavior; feeding ecology and diet; reproductive biology; conservation status; significance to humans; and end with lengthy species accounts.
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WILDPro (http://institution.wildlifeinformation.org/)
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WILDLIFE. An electronic encyclopaedia and a library of electronic books and documents providing information on the natural history, health and management of captive and free-ranging wild animals.
- Access: http://institution.wildlifeinformation.org/ (http://institution.wildlifeinformation.org/)
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Columbia Gazetteer of the World Online (http://uclibs.org/PID/23138)
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Geographic database of over 165,000 entries including place-names, physical characteristics and attributes, political properties, economic parameters, and natural and agricultural resources. Global in scope, updated monthly.
- Access: http://uclibs.org/PID/23138 (http://uclibs.org/PID/23138)
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Dictionary of Scientific Biography (complete) [via Gale Virtual Reference Library] (http://galenet.galegroup.com/servlet/eBooks?ste=22&docNum=CX2830999999&q=ucdavis)
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This classic encyclopedia covering scientists from all time periods and all fields of science has been completely revised. This "complete" online version includes all the entries from both the new (2008) edition and the original edition.
- Access: http://galenet.galegroup.com/servlet/eBooks?ste=22&docNum=CX2830999999&q=ucdavis (http://galenet.galegroup.com/servlet/eBooks?ste=22&docNum=CX2830999999&q=ucdavis)
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Handbooks & Tables
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CHEMnetBASE [via CRC Press] (http://www.chemnetbase.com/)
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Collection of searchable major chemical reference works.
- Access: http://www.chemnetbase.com/ (http://www.chemnetbase.com/)
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FishBase: A Global Information System on Fishes (http://www.fishbase.org/home.htm)
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Relational database on fish from around the world including information on: taxonomy, synonym tables, average sizes and weights, environment, climate, importance, resilience, distribution, diagnosis, biology, Red list status, life history, reproduction, ecology, genetics, illustrations, photographs and much more. Developed at the WorldFish Center in collaboration with the Food and Agriculture Organization of the United Nations (FAO) and many other partners, and with support from the European Commission (EC).
- Access: http://www.fishbase.org/home.htm (http://www.fishbase.org/home.htm)
Professional Societies
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Directory of Marine Sciences, UC Marine Council (http://www.ucop.edu/research/ucmarine/marinesearch2.php)
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The UC Marine Council Directory of Marine Sciences includes over 600 individual faculty and researchers from the different campuses listed by research categories. Descriptions of individual campus marine research and education programs are included in a separate directory. The Directory is intended to provide a comprehensive reference for marine research and educational resources of the University of California system.
- Access: http://www.ucop.edu/research/ucmarine/marinesearch2.php (http://www.ucop.edu/research/ucmarine/marinesearch2.php)